Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs11161613 | chr1:85886678 | A/G | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs111651870 | chr6:39492232 | G/A | 0.000122 | 62 | 65.47 | 17.22 | 54.5 | KM Plot |
| KICH | rs111955074 | chr2:137097214 | C/T | 8.84E-7 | 64 | 65.47 | 64.87 | 20.75 | KM Plot |
| KICH | rs11226838 | chr11:105612056 | C/A | 3.97E-7 | 64 | 68.13 | 60.5 | 25.13 | KM Plot |
| KICH | rs112428234 | chr16:27176654 | C/T | 4.67E-7 | 62 | 68.13 | 47.9 | 16.9 | KM Plot |
| KICH | rs11279659 | chr10:61954935 | GGAGATC/G | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |
| KICH | rs113032802 | chr1:85778305 | ATATT/A | 8.91E-7 | 64 | 64.83 | 91.73 | 20.75 | KM Plot |
| KICH | rs113324349 | chr12:6850725 | A/C | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs113600028 | chr16:27178934 | G/A | 6.66E-7 | 63 | 67.47 | 45.53 | 16.9 | KM Plot |
| KICH | rs115572366 | chr1:84202769 | G/A | 9.62E-7 | 64 | 65.47 | 62.77 | 20.75 | KM Plot |
| KICH | rs11576668 | chr1:45770167 | G/C | 5.7E-7 | 64 | 63.23 | 93.35 | 16.9 | KM Plot |
| KICH | rs11590830 | chr1:85779863 | C/T | 8.91E-7 | 64 | 64.83 | 91.73 | 20.75 | KM Plot |
| KICH | rs11621564 | chr14:91788739 | A/G | 4.65E-6 | 64 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs11626259 | chr14:91790538 | C/G | 4.62E-6 | 64 | 66.78 | 67.1 | 26.33 | KM Plot |
| KICH | rs11626393 | chr14:91790791 | C/T | 4.62E-6 | 64 | 66.78 | 67.1 | 26.33 | KM Plot |